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Table 2 List of proteins identified in the hydrosoluble fractionof Mycoplasma fermentans MFI proteome obtained from 2D page Triton X-114

From: Proteome analysis of Mycoplasma fermentans cultured under aerobic and anaerobic conditions

spot

protein ID

Mw (Da)

pI

count

score

Acc. No.

New Acc. No.

gene

1

ABC transporter ATP-binding protein

41,298.6

7.83

11

100

gi|319,777,349|ref.|YP_004137000.1|

WP_013354741.1

abca

2–3–12-31-32-33-34

choline kinase

40,261.00

8.44

25

< 95

gi|308,189,726|ref.|YP_003922657.1|

WP_013354414.1

licA

4

chaperone protein dnaK

58,875.1

5.43

21

100

gi|308,189,677|ref.|YP_003922608.1|

WP_013354365.1

dnak

5

ATP-dependent DNA helicase PcrA

25,219.4

7.96

6

< 95

gi|308,189,989|ref.|YP_003922920.1|

WP_013354677.1

pcrA

6

translation initiation factor IF-2

66,485.8

6.71

10

< 95

gi|308,189,652|ref.|YP_003922583.1|

WP_013354340.1

infB

7

elongation factor G

77,217.8

5.74

24

100

gi|148,377,855|ref.|YP_001256731.1|

WP_011949750.1

fusA

8–9

phosphoketolase family protein

89,889.5

6.39

57

100

gi|308,189,603|ref.|YP_003922534.1|

WP_013354291.1

xfp

10

phosphoenolpyruvate--protein phosphotransferase

48,282.4

7.67

14

100

gi|308,189,969|ref.|YP_003922900.1|

WP_013354657.1

ptsI

11

peptidylprolyl isomerase (trigger factor)

18,722.4

8.54

8

100

gi|308,189,700|ref.|YP_003922631.1|

WP_013354388.1

tig

13

peptide chain release factor 1

39,782.6

5.40

11

100

gi|308,190,290|ref.|YP_003923221.1|

WP_013354976.1

prfA

14

pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha

31,168.1

9.45

13

100

gi|308,190,218|ref.|YP_003923149.1|

WP_013354904.1

pdhA

15

phosphopyruvate hydratase/enolase

17,582.9

4.86

8

100

gi|308,189,766|ref.|YP_003922697.1|

WP_013354454.1

eno

16

arginine deiminase

31,623.3

5.82

14

100

gi|308,189,965|ref.|YP_003922896.1|

WP_013354653.1

arcA

17

elongation factor Tu (EF-Tu)

43,620.5

6.30

25

100

gi|308,189,768|ref.|YP_003922699.1|

WP_013354456.1

tuf

18

ornithine carbamoyltransferase

38,356.7

8.03

23

100

gi|308,189,964|ref.|YP_003922895.1|

WP_013354652.1

argF

19

DNA polymerase III subunit gamma/tau

29,077.1

4.63

3

100

gi|308,190,298|ref.|YP_003923229.1|

WP_013354984.1

dnaX

20

YebC/PmpR family DNA-binding transcriptional regulator

19,896.7

4.45

7

100

gi|308,189,601|ref.|YP_003922532.1|

WP_013354289.1

pmpr

21

class II fructose-1,6-bisphosphate aldolase

30,822

8.35

15

100

gi|308,189,732|ref.|YP_003922663.1|

WP_013354420.1

fba

22

23S rRNA (guanosine(2251)-2′-O)-methyltransferase RlmB

25,771.6

8.89

3

< 95

gi|308,190,283|ref.|YP_003923214.1|

WP_013354969.1

rlmb

23

DNA polymerase III subunit alpha

32,241.8

9.18

9

< 95

gi|308,190,227|ref.|YP_003923158.1|

WP_013354913.1

dnaE

24

ribosome recycling factor

20,417.7

6.20

8

100

gi|308,190,230|ref.|YP_003923161.1|

WP_013354916.1

frr

25

hyalorunate lyase

8234.2

6.13

4

< 95

gi|308,190,026|ref.|YP_003922957.1|

WP_013354714.1

hysA

26

hypoxanthine phosphoribosyltransferase

14,458.7

8.78

9

100

gi|308,189,952|ref.|YP_003922883.1|

WP_013354640.1

hpt

27

transcription elongation factor GreA

6863.6

5.05

5

100

gi|308,189,955|ref.|YP_003922886.1|

WP_013354643.1

greA

28

nucleoside 2-deoxyribosyltransferase

18,332.4

5.78

11

100

gi|319,777,718|ref.|YP_004137369.1|

WP_013355007.1

ndt

29

RpiB/LacA/LacB family sugar-phosphate isomerase

14,164.1

6.58

9

100

gi|308,189,658|ref.|YP_003922589.1|

WP_013354346.1

rpiB

30

50s ribosomal protein L7/L12

12,807.9

5.08

6

100

gi|308,190,181|ref.|YP_003923112.1|

WP_013354867.1

rplL

35

phosphate ABC transporter

38,776.9

8.9

6

< 95

gi|308,190,268|ref.|YP_003923199.1|

WP_013354954.1

pstB

36–38

molecular chaperone DnaJ

24,597.1

9.1

13

< 95

gi|308,189,684|ref.|YP_003922615.1|

WP_013354372.1

dnaJ

37

30S ribosomal protein S2

22,851

9.1

3

< 95

gi|308,189,983|ref.|YP_003922914.1|

WP_013354671.1

rpsB

  1. The score number corresponds to the confidence of the protein ID: scores above 95% are significant; lower scores (< 95%) may be correct, but should require more evidence. The count represents the number of peptides that match the protein