Table 4 Characteristics of biological process, molecular function and KEGG pathways of protein–protein interaction of anaerobic and aerobic Mycoplasma Fermentans with STRING 10.0
From: Proteome analysis of Mycoplasma fermentans cultured under aerobic and anaerobic conditions
A. MFI Anaerobic | ||
Biological Process (GO) | ||
Pathway ID | Pathway description | matching protein |
GO.0044267 | cellular protein metabolic process | arcA,lysS,rplB,rplQ,tuf |
GO.1901566 | organonitrogen compound biosynthetic process | arcA,lysS,rplB,rplQ,tuf |
GO.0006412 | translation | lysS,rplB,rplQ,tuf |
GO.0044249 | cellular biosynthetic process | arcA,lysS,rplB,rplQ,tuf |
GO.0010467 | gene expression | lysS,rplB,rplQ,tuf |
GO.0008152 | metabolic process | arcA,licA,lysS,rplB,rplQ,tuf |
GO.0006520 | cellular amino acid metabolic process | arcA,lysS |
Molecular Function (GO) | ||
GO.0003674 | molecular_function | arcA,licA,lysS,rplB,rplQ,tuf |
GO.0003824 | catalytic activity | arcA,licA,lysS,rplB,tuf |
KEGG Pathways | ||
03020 | RNA polymerase | rpoA,rpoB,rpoC |
00230 | Purine metabolism | dnaE,dnaX,hpt,rpoA,rpoB,rpoC |
01110 | Biosynthesis of secondary metabolites | arcA,asnA,eno,fba,hpt,rpiB |
01100 | Metabolic pathways | arcA,asnA,dnaE,dnaX,eno,fba,hpt,rpiB,rpoA,rpoB,rpoC |
B. MFI Aerobic | ||
Biological Process (GO) | ||
Pathway ID | Pathway description | matching protein |
GO:0044267 | cellular protein metabolic process | dnaK,lysS,rpsS,tuf |
GO:0008152 | metabolic process | dnaK,licA,lysS,rpsS,tuf |
GO:0006412 | translation | lysS,rpsS,tuf |
GO:0010467 | gene expression | lysS,rpsS,tuf |
Molecular Function (GO) | ||
GO:0003674 | molecular_function | dnaK,licA,lysS,rpsS,tuf |
GO:0003676 | nucleic acid binding | lysS,rpsS,tuf |
GO:0032550 | purine ribonucleoside binding | dnaK,lysS,tuf |
GO:0032555 | purine ribonucleotide binding | dnaK,lysS,tuf |
GO:0035639 | purine ribonucleoside triphosphate binding | dnaK,lysS,tuf |
GO:0097159 | organic cyclic compound binding | dnaK,lysS,rpsS,tuf |
GO:1901363 | heterocyclic compound binding | dnaK,lysS,rpsS,tuf |
GO:0005524 | ATP binding | dnaK,lysS |
GO:0003723 | RNA binding | rpsS,tuf |
KEGG Pathways | ||
03010 | Ribosome | rplL, rpsB, rpsC, rpsD, rpsE, rpsG, rpsI, rpsJ, rpsK, rpsM, rspQ, rpsS |
03430 | Mismatch Repair | dnaX, dnaE, pcrA |
00230 | Purine metabolism | dnaE,dnaX, rpoA |