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Table 2 Description of polymorphisms analyzed

From: Association of the rs4646994 in ACE gene with susceptibility to tuberculosis in a region of the Brazilian Amazon

GENE

IDENTIFICATION

TYPE

PRIMERS/PROBE

AMPLIFIED

ACE2

rs4646994

INDEL

F-5’ATCCTGTAAGCCACTGCTGGA3’

R- 5’GGCGAAACCACATAAAAGTGA3’

94–382 pb

CCR5

rs333

INDEL

F-5’CTCCCAGGAATCATCTTTACCA3’

R-5’TTTTTAGGATTCCCGAGTAGCA3’

146–178 pb

SGSM03

rs56228771

INDEL

F-5’CTAGTAGGCTCCTGGCCTCTTT3’

R-5’GCAGAACCTTGGACCTGAATAC3’

117–121 pb

CYP2E1

INDEL

F-5’TGTCCCAATACAGTCACCTCTTT3’

R-5’GGCTTTTATTTGTTTTGCATCTG3’

397–493 pb

HLA-G

rs371194629

INDEL

F-5’CTGTTTAAAGTGTCACCCCTCAC3’

CAGTTCAGCATGAGGAAGAGG3’

192–206 pb

IL1A

rs3783553

INDEL

F-5’TGGTCCAAGTTGTGCTTATCC3’

R-5’ACAGTGGTCTCATGGTTGTCA3’

230–234 pb

IL4

rs79071878

VNTR

F-5’AGGGTCAGTCTGGCTACTGTGT3’

R-5’CAAATCTGTTCACCTCAACTGC3’

147/217/287 pb

MDM2

rs3730485

INDEL

F-5’GGAAGTTTCCTTTCTGGTAGGC3’

R-5’TTTGATGCGGTCTCATAAATTG3’

192–232 pb

TP53

rs17880560

INDEL

F-5’TCCATTCATAACTCAGGAACCA3’

R-5’TTAAATCCCGTAATCCTTGGTG3’

135–141 pb

TYMS

rs151264360

INDEL

F-5’ATCCAAACCAGAATACAGCACA3’

R-5’CTCAAATCTGAGGGAGCTGAGT3’

213–219 pb

UCP2

INDEL

F-5’CCCACACTGTCAAATGTCAACT3’

R-5’CCATGCTTTCCTTTTCTTCCT3’

119–164 pb

UGT1A1a

rs8175347

VNTR

F-5’CTCTGAAAGTGAACTCCCTGCT3’

R-5’AGAGGTTCGCCCTCTCCTAT3’

133/135/137/139 pb

XRCC1

rs3213239

INDEL

F-5’GAACCAGAATCCAAAAGTGACC3’

R-5’AGGGGAAGAGAGAGAAGGAGAG3’

243-247pb

MiR-146ª

rs2910164

SNP

C__15946974_10

MIR-499

rs3746444

SNP

C___2142612_30

MiR-196a2

rs11614913

SNP

C__31185852_10

MiR-149

rs2292832

SNP

C__11533078_1_

  1. aAllele 5 and 6 are Del and allele 7 and 8 are Ins